PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2258590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 259aa    MW: 28016.7 Da    PI: 11.9621
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2258590.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP24.49.4e-0895118326
              TCP   3 gkkdrhskihTkvggRdRRvRlsa 26 
                      +kk +++++h+kv+gR+RR+R++ 
  Lj5g3v2258590.1  95 VKKPPSKDRHSKVDGRGRRIRMPX 118
                      79********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MCPPPVSTSS CRSIIRPLFP LSPSIQSLPH STLNSSSSSS SSSSSSSIQI PRNSHCNKPY  60
SHFSLHLLTM SSSDGTTNGS MIDPQRTNQQ QQLSVKKPPS KDRHSKVDGR GRRIRMPXXX  120
XXXXXXXXXP LTPPPPPPPA PAPPPPASPP SLSRSAAPPT TPRSLLLRLT TNPCLLLLLL  180
RSFSGSVYAP TMIPPPPPRM TLLDTRLLAL LLLLVCGLFL LGLILDRYGA LLLPPPPRRK  240
WWGTRPCPGP VSAKRTPSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.12e-12TCP family protein